Working in the Lab: Interpreting and Communicating Biological Data

This cluster covers the fundamentals of analyzing, interpreting, and communicating biological data in a research lab environment. In addition, the cluster introduces learners to the basics of working successfully in a lab, using databases such as BLAST and PubMed, and programming with Python.   This cluster was originally developed for the Amgen Scholars Program, an initiative that provides hands-on research experiences in biotechnology and life sciences at leading universities and research institutions.

Topics

  • lab culture
  • culture
  • norms
  • expectations
  • norms and expectations
  • lab roles
  • table of contents
  • agenda
  • protocols
  • errors
  • data
  • notes
  • notebook
  • lab notebook
  • making the most of a summer research experience
  • research help
  • research advice
  • advice
  • becoming a scientist
  • communication
  • lab mentor
  • overcoming adversity
  • overcoming struggles
  • adversity
  • common struggles
  • advice for future scientists
  • bibliography
  • saved search
  • account
  • NCBI
  • gene
  • DNA sequence
  • refseqgene
  • PCR primer specificity
  • designing PCR primers
  • PCR primers
  • 3D protein structure
  • expression pattern
  • homolog search
  • curated sequence
  • phenotype
  • disease
  • NCBI
  • BLAST
  • BLAST search
  • BLAST search parameters
  • aligning sequences
  • align two sequences
  • BLAST topics
  • BLAST results
  • FASTA
  • sequence
  • DNA sequence
  • amino acid sequence
  • coding for science
  • data literacy
  • data set
  • python
  • coding
  • machine learning
  • gel
  • PAGE
  • SDS PAGE
  • polyacrylamide
  • agarose
  • coommassie
  • electrophoresis
  • purification
  • intensity
  • band
  • purity
  • concentration
  • SDS
  • molecular weight
  • molar mass
  • protein
  • denaturing
  • sequencing chromatogram
  • automatic base-caller
  • base caller
  • sequence
  • sequencing
  • thymine
  • guanine
  • cytosine
  • adenine
  • inhibitor
  • inhibition
  • repression
  • repressor
  • activator
  • activation
  • signaling
  • information
  • central dogma
  • glycolysis
  • cofactor
  • enzyme
  • product
  • reactant
  • pathway
  • chemical reaction
  • facilitated diffusion
  • diffusion
  • diagrams
  • biological diagrams
  • arrows
  • movement
  • model figure
  • common shapes of data
  • types of data
  • pie graph
  • bar graph
  • bar plot
  • barplot
  • box and whisker plot
  • boxplot
  • circle chart
  • pie chart
  • histogram
  • violin plot
  • box plot
  • PyMOL
  • BLOSUM
  • BLOSUM62
  • clustal
  • gap
  • deletion
  • insertion
  • substitution score
  • sequence alignment
  • rmsd
  • structural alignment
  • blosum
  • substitution matrix
  • 1d alignment
  • 3d alignment
  • alignment
  • non-conservative
  • semi-conservative
  • conservative
  • conserved
  • centerspread
  • standard deviation
  • range
  • interquartile range
  • IQR
  • mean
  • median
  • mode